.git-blame-ignore-revs

+# pre-commit run -a (Guilhem Saurel, 2022-07-27)
+db4d991c9d727b8454695ce8d88948b948c6b36f

.gitignore

+*.pyc
+build
+*~

.gitlab-ci.yml

+include: http://rainboard.laas.fr/project/dynamic-graph-python/.gitlab-ci.yml

.gitmodules

+[submodule "cmake"]
+	path = cmake
+	url = https://github.com/jrl-umi3218/jrl-cmakemodules.git

.pre-commit-config.yaml

+exclude: tests/test_python-syntax_error.py
+ci:
+    autoupdate_branch: 'devel'
+repos:
+-   repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: v14.0.6
+    hooks:
+    -   id: clang-format
+        args: [--style=Google]
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+    -   id: check-added-large-files
+    -   id: check-ast
+    -   id: check-executables-have-shebangs
+    -   id: check-json
+    -   id: check-merge-conflict
+    -   id: check-symlinks
+    -   id: check-toml
+    -   id: check-yaml
+    -   id: debug-statements
+    -   id: destroyed-symlinks
+    -   id: detect-private-key
+    -   id: end-of-file-fixer
+    -   id: fix-byte-order-marker
+    -   id: mixed-line-ending
+    -   id: trailing-whitespace
+-   repo: https://github.com/psf/black
+    rev: 22.8.0
+    hooks:
+    -   id: black
+-   repo: https://github.com/PyCQA/flake8
+    rev: 5.0.4
+    hooks:
+    -   id: flake8
+-   repo: https://github.com/cheshirekow/cmake-format-precommit
+    rev: v0.6.13
+    hooks:
+    - id: cmake-format

.yapfignore

+tests/test_python-syntax_error.py

AUTHORS

-Authors: 

CMakeLists.txt

-#
-#  Copyright
-#
-
-CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
-
-SET(PROJECT_NAME dynamic-graph-python)
-project(${PROJECT_NAME})
-
-SET(PROJECT_VERSION 1.0)
-
-SET(CMAKE_VERBOSE_MAKEFILE true)
-
-IF(WIN32)
-  SET(LIBDIR_KW "/LIBPATH:")
-  SET(LIBINCL_KW "")
-  SET(LIB_EXT ".lib")
-ENDIF(WIN32)
-
-IF(UNIX)
-  SET(LIBDIR_KW "-L")
-  SET(LIBINCL_KW "-l")
-  SET(LIB_EXT "")
-ENDIF(UNIX)
-
-#
-# Look for dependencies
-#
-
-# Load Pkgconfig macros
-INCLUDE(FindPkgConfig)
-SET(PACKAGE_REQUIREMENTS "")
-
-#
-#  Dependency to package dynamic-graph
-#
-SET(DYNAMIC_GRAPH_FOUND 0)
-SET(DYNAMIC_GRAPH_REQUIRED "dynamic-graph >= 1.0")
-PKG_CHECK_MODULES(DYNAMIC_GRAPH REQUIRED ${DYNAMIC_GRAPH_REQUIRED})
-EXEC_PROGRAM(${PKG_CONFIG_EXECUTABLE} ARGS  --variable=docdir dynamic-graph
-  OUTPUT_VARIABLE DYNAMIC_GRAPH_DOCDIR)
-MESSAGE(STATUS "pkg-config: ${PKG_CONFIG_EXECUTABLE}")
-MESSAGE(STATUS "DYNAMIC_GRAPH_DOCDIR=${DYNAMIC_GRAPH_DOCDIR}")
-SET(DYNAMIC_GRAPH_FOUND 1)
-
-IF(NOT ${DYNAMIC_GRAPH_FOUND})
-  MESSAGE(FATAL_ERROR "Check that package dynamic-graph is installed in a directory pointed out by PKG_CONFIG_PATH.")
-ENDIF(NOT ${DYNAMIC_GRAPH_FOUND})
-
-IF(PACKAGE_REQUIREMENTS STREQUAL "")
-  SET(PACKAGE_REQUIREMENTS ${DYNAMIC_GRAPH_REQUIRED})
-ELSE(PACKAGE_REQUIREMENTS STREQUAL "")
-  SET(PACKAGE_REQUIREMENTS "${PACKAGE_REQUIREMENTS}, ${DYNAMIC_GRAPH_REQUIRED}")
-ENDIF(PACKAGE_REQUIREMENTS STREQUAL "")
-
-#
-# pkg-config file
-#
-
-SET(install_pkg_prefix "\${prefix}")
-SET(install_pkg_exec_prefix "\${exec_prefix}")
-SET(install_pkg_libdir "\${libdir}")
-SET(install_pkg_datarootdir "\${datarootdir}")
-SET(install_pkg_include_dir "\${includedir}")
-
-# Install the file in the appropriate place.
-SET(install_libdir_pkgconfig ${CMAKE_INSTALL_PREFIX}/lib/pkgconfig)
-
-CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/${PROJECT_NAME}.pc.cmake
-  ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}.pc)
-
-INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}.pc
-  DESTINATION ${install_libdir_pkgconfig}
-  PERMISSIONS OWNER_READ GROUP_READ WORLD_READ OWNER_WRITE)
-
-ADD_SUBDIRECTORY(src)
-
-#
-# Documentation produced by doxygen
-#
-INCLUDE(FindDoxygen)
-IF(DOXYGEN_FOUND)
-  add_subdirectory(doc)
-ENDIF(DOXYGEN_FOUND)
+# Copyright 2010-2020, Florent Lamiraux, Thomas Moulard, Olivier Stasse, Guilhem
+# Saurel, JRL, CNRS/AIST, LAAS-CNRS
+
+cmake_minimum_required(VERSION 3.1)
+
+# Project properties
+set(PROJECT_ORG stack-of-tasks)
+set(PROJECT_NAME dynamic-graph-python)
+set(PROJECT_DESCRIPTION "Dynamic graph library Python bindings")
+set(PROJECT_URL "https://github.com/${PROJECT_ORG}/${PROJECT_NAME}")
+
+# Project options
+option(SUFFIX_SO_VERSION "Suffix library name with its version" ON)
+
+# Project configuration
+set(PROJECT_USE_CMAKE_EXPORT TRUE)
+set(CUSTOM_HEADER_DIR "dynamic-graph/python")
+set(CXX_DISABLE_WERROR TRUE)
+set(DOXYGEN_USE_MATHJAX YES)
+
+# JRL-cmakemodule setup
+include(cmake/base.cmake)
+include(cmake/boost.cmake)
+
+# Project definition
+compute_project_args(PROJECT_ARGS LANGUAGES CXX)
+project(${PROJECT_NAME} ${PROJECT_ARGS})
+check_minimal_cxx_standard(14 ENFORCE)
+
+# Project dependencies
+set(PYTHON_COMPONENTS Interpreter Development NumPy)
+add_project_dependency(dynamic-graph 4.4.0 REQUIRED)
+add_project_dependency(eigenpy 2.7.10 REQUIRED)
+set(PYTHON_EXPORT_DEPENDENCY_MACROS
+    "list(APPEND PYTHON_COMPONENTS ${PYTHON_COMPONENTS})\n${PYTHON_EXPORT_DEPENDENCY_MACROS}"
+)
+if(BUILD_TESTING)
+  find_package(Boost REQUIRED COMPONENTS unit_test_framework)
+endif(BUILD_TESTING)
+
+if(Boost_VERSION GREATER 107299 OR Boost_VERSION_MACRO GREATER 107299)
+  # Silence a warning about a deprecated use of boost bind by boost >= 1.73
+  # without dropping support for boost < 1.73
+  add_definitions(-DBOOST_BIND_GLOBAL_PLACEHOLDERS)
+endif()
+
+# Main Library
+set(${PROJECT_NAME}_HEADERS
+    include/${CUSTOM_HEADER_DIR}/api.hh
+    include/${CUSTOM_HEADER_DIR}/convert-dg-to-py.hh
+    include/${CUSTOM_HEADER_DIR}/dynamic-graph-py.hh
+    include/${CUSTOM_HEADER_DIR}/fwd.hh
+    include/${CUSTOM_HEADER_DIR}/interpreter.hh
+    include/${CUSTOM_HEADER_DIR}/module.hh
+    include/${CUSTOM_HEADER_DIR}/python-compat.hh
+    include/${CUSTOM_HEADER_DIR}/signal.hh
+    include/${CUSTOM_HEADER_DIR}/signal-wrapper.hh)
+
+set(${PROJECT_NAME}_SOURCES
+    src/interpreter.cc src/dynamic_graph/python-compat.cc
+    src/dynamic_graph/entity-py.cc src/dynamic_graph/convert-dg-to-py.cc)
+
+add_library(${PROJECT_NAME} SHARED ${${PROJECT_NAME}_SOURCES}
+                                   ${${PROJECT_NAME}_HEADERS})
+target_include_directories(${PROJECT_NAME} PUBLIC $<INSTALL_INTERFACE:include>)
+target_link_libraries(${PROJECT_NAME} PUBLIC dynamic-graph::dynamic-graph)
+modernize_target_link_libraries(
+  ${PROJECT_NAME}
+  SCOPE
+  PUBLIC
+  TARGETS
+  Python${PYTHON_VERSION_MAJOR}::Python
+  LIBRARIES
+  ${PYTHON_LIBRARIES}
+  INCLUDE_DIRS
+  ${PYTHON_INCLUDE_DIRS})
+target_link_boost_python(${PROJECT_NAME} PUBLIC)
+
+if(SUFFIX_SO_VERSION)
+  set_target_properties(${PROJECT_NAME} PROPERTIES SOVERSION ${PROJECT_VERSION})
+endif(SUFFIX_SO_VERSION)
+
+target_compile_definitions(${PROJECT_NAME}
+                           PRIVATE PYTHON_LIBRARY="${PYTHON_LIBRARY}")
+
+install(
+  TARGETS ${PROJECT_NAME}
+  EXPORT ${TARGETS_EXPORT_NAME}
+  DESTINATION lib)
+
+add_subdirectory(src)
+if(BUILD_TESTING)
+  add_subdirectory(tests)
+endif(BUILD_TESTING)
+
+install(FILES package.xml DESTINATION share/${PROJECT_NAME})

COPYING

-#
-# Copyright (c) 
-#
-# Permission to use, copy, modify, and distribute this software for any
-# purpose with or without fee is hereby granted, provided that the above
-# copyright notice and this permission notice appear in all copies.
-#
-# THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
-# WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
-# MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
-# ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
-# WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
-# ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
-# OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
+BSD 2-Clause License
 
+Copyright (c) 2011-2019, CNRS
+Author: Stack of Tasks Development Team
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

ChangeLog

-Write in this file the modifications you commit.

INSTALL

-#
-#  Copyright
-#
-
-Installation instructions for library dynamic-graph-python
-----------------------------------------------
-
-It is recommended to create a specific directory to install this package.
-mkdir build
-cd build
-cmake [Options] ..
-make 
-make install
-
-Options:
-
--DCMAKE_INSTALL_PREFIX=...
-  specifies the directory where to install the package.
-
--DCMAKE_BUILD_TYPE=[none|debug|release|relwithdebinfo|MinSizeRel]
-  specifies to type of compilation (release, debug, ...)

NEWS

-Write in this file the news related to package dynamic-graph-python.

README

-See INSTALL for installation instruction.

README.md

+# dynamic-graph-python
+
+[![Building Status](https://travis-ci.org/stack-of-tasks/dynamic-graph-python.svg?branch=master)](https://travis-ci.org/stack-of-tasks/dynamic-graph-python)
+[![Pipeline status](https://gitlab.laas.fr/stack-of-tasks/dynamic-graph-python/badges/master/pipeline.svg)](https://gitlab.laas.fr/stack-of-tasks/dynamic-graph-python/commits/master)
+[![Coverage report](https://gitlab.laas.fr/stack-of-tasks/dynamic-graph-python/badges/master/coverage.svg?job=doc-coverage)](http://projects.laas.fr/stack-of-tasks/doc/stack-of-tasks/dynamic-graph-python/master/coverage/)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/stack-of-tasks/dynamic-graph-python/master.svg)](https://results.pre-commit.ci/latest/github/stack-of-tasks/dynamic-graph-python)
+
+Python bindings for dynamic-graph.
+
+
+**Warning:** this repository contains [Git
+submodules][git-submodules]. Please clone this repository using the
+`git clone --recursive` command. If you already have cloned the
+repository, you can run `git submodule init && git submodule update`
+to retrieve the submodules.
+
+## Documentation
+
+[Online](https://gepettoweb.laas.fr/doc/stack-of-tasks/dynamic-graph-python/master/doxygen-html/)
+
+
+## Getting Help
+
+Support is provided through:
+ * the [issue tracker](https://github.com/stack-of-tasks/dynamic-graph-python/issues)
+ * the matrix room [#stack-of-tasks:laas.fr](https://matrix.to/#/#stack-of-tasks:laas.fr)
+
+
+## How can I install dynamic-graph?
+
+### Compiling and installing the package
+
+The manual compilation requires two steps:
+
+ 1. configuration of the build and generation of the build files
+ 2. compilation of the sources and installation of the package
+
+dynamic-graph uses CMake to generate build files. It is
+recommended to create a separate build directory:
+
+```sh
+mkdir build
+cd build
+cmake ..
+```
+
+```sh
+make
+make test
+make install
+```
+
+### Options
+
+Additional options can be set on the command line through the
+following command: `-D<option>=<value>`.
+
+For instance: `cmake -DCMAKE_BUILD_TYPE=RelWithDebInfo ..` will set
+the `CMAKE_BUILD_TYPE` option to the value `RelWithDebInfo`.
+
+
+Available options are:
+
+- `CMAKE_BUILD_TYPE` set the build profile that should be used (debug,
+  release, etc.). We recommend `RelWithDebInfo` as it will provide
+  performances while keeping debugging symbols enabled.
+- `CMAKE_INSTALL_PREFIX` set the installation prefix (the directory
+  where the software will be copied to after it has been compiled).
+
+
+### Running the test suite
+
+The test suite can be run from your build directory by running:
+
+```sh
+make test
+```
+
+Please open a ticket if some tests are failing on your computer, it
+should not be the case.

autogen.sh

-echo ""
-echo "This package is installed through cmake. Please read INSTALL for instructions."
-echo ""

cmake @ 08c2c18b

+Subproject commit 08c2c18b9033c2f0a86b885b589f4fa63a163caf

doc/CMakeLists.txt

-# 
-#  Copyright 
-# 
-
-# Configure package.dox file
-CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/package.dox.cmake
-  ${CMAKE_CURRENT_BINARY_DIR}/package.dox
-)
-
-
-ADD_CUSTOM_COMMAND(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/html/index.html
-  COMMAND ${DOXYGEN_EXECUTABLE} \"${CMAKE_CURRENT_BINARY_DIR}/package.dox\"
-)
-
-ADD_CUSTOM_TARGET(documentation ALL
-  DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/html/index.html)
-
-#
-# Install html documentation
-#
-
-# html files
-INSTALL(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/html
-  DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/${PROJECT_NAME})
-
-# doxytag
-INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}.doxytag
-  DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/${PROJECT_NAME}/html)
-
-# pictures
-INSTALL(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/pictures
-  DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/${PROJECT_NAME}/html)

doc/footer.html

@@ -8,4 +8,3 @@
  </center>
  </body>
  </head>
-

doc/header.html

@@ -4,4 +4,3 @@
       <LINK HREF="package.css" REL="stylesheet" TYPE="text/css">
     </HEAD>
     <BODY>
-